After auto-updating to version 4.0.0.0, several programs that I had licenses for updated to newer free versions that I don't have a license for. In the prior version, I had these apps tagged as "do not update". This list of apps not to update did not carry-forward to the new version. This is very frustrating as I can't get some of my full featured older version apps back.
Sorry about this, can you choose to skip them using the context menu going forward? The format of how we store settings was improved so unfortunately they don't carry over for the skip apps.